Scientific Output
Publications
Please see the publications page of this website.
And for a complete and up-to-date list, please visit my google scholar page.
Software
delfies: Detection of double-strand breaks followed by neo-telomered addition; Gramtools: Genotyping highly variable loci across populations using genome graphs; Snakefmt: The formatter for Snakemake files
Conferences
2026
EMBO Molecular Mechanisms of Selfish Elements - Bern, Switzerland
2025
ESEB 2025 - Barcelona, Spain
ALPHY 2025 - Lyon, France
2024
Ver Midi XXV - Lyon, France;
ALPHY 2024 - Montpellier, France;
ICTE 2024 - Saint Malo, France
2023
ISMB/ECCB 2023 - Lyon, France;
3Sex - Jacques Monod Conference - Roscoff, France;
ALPHY 2023 - Grenoble, France
Invited Seminars
2024
BIGRE Seminar - TIMC-IMAG, Grenoble, France;
MalariaGEN Journal Club - MalariaGEN Consortium, Online
2023
LBBE Lab Seminar - LBBE, Lyon, France
Visits
2024
Team Bétermier - I2BC, Paris, France;
Team Blaxter - Wellcome Sanger Institute, Cambridge, UK
Education
2018-2022
PhD in Bioinformatics - University of Cambridge and EMBL-EBI, UK
2016-2018
Msc Bioinformatics - University of Lyon 1, France.
2012-2016
Bsc Biology (Honours Evolutionary Biology) - University Of Edinburgh, UK.
Scientific Service
Teaching
2023-
ENS de Lyon, Masters Biosciences: UE Advanced Genomics; UE Practicals in next generation sequencing; UE Developmental Biology: New concepts and approaches
2019-2022
EMBL-EBI, PhD students: Using Workflow Management Systems (Snakemake) and Introduction to High-Performance Computing
Online webinar: Why and how to develop open-source software
Reviewing
2025-
Genome Biology and Evolution
2023-
Genome Biology; Bioinformatics Advances; Journal Of Open Source Software
2022-
Microbial Genomics; Bioinformatics
Communities
2023-
Chair & Organiser of a monthly Seminar Series on Molecular Evolution at ENS de Lyon, France
2024-
Elected Board member on the Scientific Council of the LBMC Laboratory - as representative for postdocs
2023-
Jury member: ENS de Lyon Masters Biosciences; Université Lyon 1 Masters Cellular and Molecular Biology (BMC) and Bioinformatics
2020
Organiser of the 2020 EMBL-EBI/Sanger/Cambridge University eSCAMPS Conference
Supervision
2026
Basile Bergeron, M2 ENSAT engineering school, Toulouse, France
Ihssane Bahri, M2 Msc Structural and Functional Biochemistry, Université Lyon 1, France
2025
Clara Centa, M1 Msc Bioinformatics, Université Lyon 1, France
Andrew Hsiao, M2 Msc Frontiers in Biosciences, Université Lyon 1, France
2024
João Ribeiro, Bsc Bioinformatics, Setubal Polytechnic University, Portugal
Guilhem Biossé, M1 Msc Bioinformatics, Université Montpellier, France
Outreach
2025
Déclics 2025 - dialogues between researchers and high-school students
Nuit de la Recherche - Fête de la Science (Saint-Etienne)
Awards
Successes
2024-
Travel grant to ALPHY 2024 (300€); Travel grant to ESEB 2025 (700€)
2022-
Best Talk at ISMB/ECCB 2023 Conference (Section EvolCompGen) ($200); Best Talk award at JOBIM 2022 Conference (400€)
2018-2022
Postgraduate fellowship - full tuition at University of Cambridge
2016-
Ashworth Medal for best student in Evolutionary Biology - University of Edinburgh (2016; £400); Best student in Msc Bioinformatics - University of Lyon 1 (2018)
2012-2016
Undergraduate fellowship - full tuition at University of Edinburgh
Unsuccesses
2023-
EMBO Postdoc Fellowship - (2023 after oral interview); Marie Skłodowska-Curie Actions Postdoc Fellowship (2024; grade 91.8%)